committed revision 275 to the The Software Ontology SVN repository, changing 1 files - http://theswo.svn.sourceforge.net/viewvc...
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Allyson Lister
blog: http://themindwobbles.wordpress.com
committed revision 274 to the The Software Ontology SVN repository, changing 1 files - http://theswo.svn.sourceforge.net/viewvc...
May 28, 2013
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committed revision 273 to the The Software Ontology SVN repository, changing 1 files - http://theswo.svn.sourceforge.net/viewvc...
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Comment on Entanglement: Embarassingly-scalable graphs by dwoolfenden - http://themindwobbles.wordpress.com/2013...
May 13, 2013
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Allyson, I do have a couple questions, but, I will wait until the project is made public to ask them. Look forward to having access in the near future! Thanks. dave
- Allyson Lister
Comment on Entanglement: Embarassingly-scalable graphs by Allyson Lister - http://themindwobbles.wordpress.com/2013...
May 7, 2013
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Thanks for your comment. While Entanglement is hosted on bitbucket, we have it currently set to a private project pending finalization of the API. We're happy to take any questions in the interim, and in the next week or two we should have a date scheduled for the release of the code. I hope this helps.
- Allyson Lister
Comment on Entanglement: Embarassingly-scalable graphs by dwoolfenden - http://themindwobbles.wordpress.com/2013...
May 4, 2013
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Hello, very interesting, I would like to take a closer look at Entanglement but I can't seem to find the download link at http://www.entanglementgraph.com ? Thanks. dave
- Allyson Lister
Comment on Converting a Latex Thesis to Multiple WordPress Posts by An Exercise in Irrelevance » Blog Archive » Overlays over arXiv - http://themindwobbles.wordpress.com/2012...
Apr 10, 2013
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[...] However, the process of doing this is not slick (http://themindwobbles.wordpress.com/2012......). For instance, when trying to publish one of my own papers, I have had problems as I used a [...]
- Allyson Lister
Comment on PhD Thesis: Table of Contents by An Exercise in Irrelevance » Blog Archive » Overlays over arXiv - http://themindwobbles.wordpress.com/2013...
Apr 10, 2013
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[...] WordPress (http://www.russet.org.uk/blog...); these work well enough to publish an entire thesis (http://themindwobbles.wordpress.com/2013...). However, the process of doing this is not slick [...]
- Allyson Lister
Comment on Epigenomic Data Integration with Graphs: a Beginning by Entanglement: Embarassingly-scalable graphs | the mind wobbles - http://themindwobbles.wordpress.com/2013...
Apr 3, 2013
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[...] epigenomics, graph database, ib2013, mongodb Enter your password to view comments. Epigenomic Data Integration with Graphs: a Beginning RSS [...]
- Allyson Lister
Protected: Entanglement: Embarassingly-scalable graphs - http://themindwobbles.wordpress.com/2013...
Apr 3, 2013
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There is no excerpt because this is a protected post.
- Allyson Lister
Comment on Google Scholar Citations and Microsoft Academic Search: first impressions by Tracking publications and citations | Φ – The Magic of Balance - http://themindwobbles.wordpress.com/2011...
Mar 25, 2013
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[...] little bit more reliable, even though there is a lot of debate out ther about it. Here is a good article on the [...]
- Allyson Lister
The EBI are advertising a post for a Gene Ontology developer! More details here: http://ig14.i-grasp.com/fe...
Mar 6, 2013
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Latest blog post is Epigenomic Data Integration with Graphs: a Beginning http://themindwobbles.wordpress.com/2013...
Feb 26, 2013
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Great! #NHS #homeopathy page ratings have gone from 443&157 to 448&281 since my last tweet, a 2-star to a 3-star avg https://twitter.com/allyson...
Feb 20, 2013
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Amusing but expected 443&157 vote spread of 1&5 stars for #NHS #homeopathy http://www.nhs.uk/conditi... HT @antarcticdesign https://twitter.com/allyson...
Feb 20, 2013
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Protected: Epigenomic Data Integration with Graphs: a Beginning - http://themindwobbles.wordpress.com/2013...
Feb 20, 2013
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There is no excerpt because this is a protected post.
- Allyson Lister
Summer Ontology Work: The Software Ontology - http://themindwobbles.wordpress.com/2013...
Jan 2, 2013
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In the summer of 2012, I worked with Robert Stevens and Duncan Hull (among others) on additions to the Software Ontology. As it was a short-term appointment, I kept detailed notes on the Software Ontology blog. A summary of those notes is available as its own post. I had loads of fun doing the work, [...]
- Allyson Lister
PhD Thesis: Table of Contents - http://themindwobbles.wordpress.com/2013...
Jan 2, 2013
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Below you can find a complete table of contents for all thesis-related posts (you can also get to the posts via the “thesis” tag I have used for each). Enjoy! Thesis Posts Abstract Additional Front Material Chapter 1: Background 1.1: Overview 1.2: What does systems biology data look like? 1.3: Modelling biological systems 1.4: Standards [...]
- Allyson Lister
Comment on Converting a Latex Thesis to Multiple WordPress Posts by PhD Thesis: Table of Contents « the mind wobbles - http://themindwobbles.wordpress.com/2012...
Jan 1, 2013
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[...] And, if you’re interested in how I performed the conversion, I’ve written about that too. [...]
- Allyson Lister
Comment on Chapter 6: General Discussion (Thesis) by PhD Thesis: Table of Contents « the mind wobbles - http://themindwobbles.wordpress.com/2012...
Jan 1, 2013
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[...] Chapter 6: General discussion [...]
- Allyson Lister
Comment on Chapter 5: Rule-based mediation (Thesis) by PhD Thesis: Table of Contents « the mind wobbles - http://themindwobbles.wordpress.com/2012...
Jan 1, 2013
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[...] Chapter 5: Rule-based mediation for the semantic integration of systems biology data [...]
- Allyson Lister
Comment on Chapter 4: MFO (Thesis) by PhD Thesis: Table of Contents « the mind wobbles - http://themindwobbles.wordpress.com/2012...
Jan 1, 2013
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[...] Chapter 4: Model Format OWL integrates multiple SBML specification documents [...]
- Allyson Lister
Comment on Chapter 3: Saint (Thesis) by PhD Thesis: Table of Contents « the mind wobbles - http://themindwobbles.wordpress.com/2012...
Jan 1, 2013
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[...] Chapter 3: Saint: a Web application for model annotation utilising syntactic integration [...]
- Allyson Lister
Comment on Chapter 2: SyMBA (Thesis) by PhD Thesis: Table of Contents « the mind wobbles - http://themindwobbles.wordpress.com/2012...
Jan 1, 2013
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[...] Chapter 2: SyMBA: a Web-based metadata and data archive for biological experiments [...]
- Allyson Lister
Comment on Background: Data integration methodologies for systems biology (Thesis 1.6) by PhD Thesis: Table of Contents « the mind wobbles - http://themindwobbles.wordpress.com/2012...
Jan 1, 2013
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[...] 1.6: Data integration methodologies for systems biology [...]
- Allyson Lister
Comment on Background: What are ontologies? (Thesis 1.5) by PhD Thesis: Table of Contents « the mind wobbles - http://themindwobbles.wordpress.com/2012...
Jan 1, 2013
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[...] 1.5: What are ontologies? [...]
- Allyson Lister
Comment on Background: Standards as a shared structure for data (Thesis: 1.4) by PhD Thesis: Table of Contents « the mind wobbles - http://themindwobbles.wordpress.com/2012...
Jan 1, 2013
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[...] 1.4: Standards as a shared structure for data [...]
- Allyson Lister