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Comment on Background: Standards as a shared structure for data (Thesis: 1.4) by Background: Modelling Biological Systems (Thesis 1.3) « the mind wobbles - http://themindwobbles.wordpress.com/2012...
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- Allyson Lister
Comment on Background: Standards as a shared structure for data (Thesis: 1.4) by Converting a Latex Thesis to Multiple WordPress Posts « the mind wobbles - http://themindwobbles.wordpress.com/2012...
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- Allyson Lister
Comment on Background: Modelling Biological Systems (Thesis 1.3) by Background: Standards as a shared structure for data (Thesis: 1.4) « the mind wobbles - http://themindwobbles.wordpress.com/2012...
[Previous: Modelling biological systems] [Next: What are ontologies?] Standards as a shared structure for data As described in Section 1.3, systems biology benefits from the use of common standards for describing data and from unified naming schemes to ensure precise identification of entities. The research community must make use of standardised methods to increase the annotation [...]
- Allyson Lister
Comment on Background: Modelling Biological Systems (Thesis 1.3) by Converting a Latex Thesis to Multiple WordPress Posts « the mind wobbles - http://themindwobbles.wordpress.com/2012...
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- Allyson Lister
Comment on Background: Overview (Thesis 1.1) by Background: What does systems biology data look like? (Thesis 1.2) « the mind wobbles - http://themindwobbles.wordpress.com/2012...
Comment on Background: Modelling Biological Systems (Thesis 1.3) by Background: What does systems biology data look like? (Thesis 1.2) « the mind wobbles - http://themindwobbles.wordpress.com/2012...
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- Allyson Lister
Comment on Background: What does systems biology data look like? (Thesis 1.2) by Background: Modelling Biological Systems (Thesis 1.3) « the mind wobbles - http://themindwobbles.wordpress.com/2012...
[Previous: What does systems biology data look like?] [Next: Standards as a shared structure for data] Modelling biological systems Le Novère described the 1952 Hodgkin–Huxley model of the squid giant nerve fibre [1] as the beginning of computational systems biology [2]. Since that time, systems biology models have been available in a variety of representations and with [...]
- Allyson Lister
Comment on Background: What does systems biology data look like? (Thesis 1.2) by Background: Overview (Thesis 1.1) « the mind wobbles - http://themindwobbles.wordpress.com/2012...
[Previous: ] [Next: ] What does systems biology data look like? Properties of a system exist that are more than just the sum of their parts; systems that contain these emergent properties are said to be irreducible1. Though reductionist methods of research can provide a large amount of detail for specific biological entities, a more [...]
- Allyson Lister
Overview Studying biological systems requires a large amount of data of different experimental types. Historically, each of these types is stored in its own distinct format, with its own internal structure for holding the data produced by those experiments. The use of community data standards can reduce the need for specialised, independent formats by providing [...]
- Allyson Lister
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- Allyson Lister
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- Allyson Lister
Dedication This thesis is dedicated to my parents, who encouraged me in all things, and is particularly dedicated to my husband and my son, without whose patience and support I could not have finished this research. “Among those who have endeavoured to promote learning and rectify judgement, it has long been customary to complain of [...]
- Allyson Lister